genome browser

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genome browser

✓ Published0🌍 Public

Last edited Apr 28, 2016

Created on Apr 28, 2016

This interactive genome browser visualizes the genetic sequences of multiple phages as horizontal tracks, using a custom jQuery plugin (jqPlot) to render a smooth line chart of GC content beneath each genome. The D3 v3 library enhances the display by adding SVG-rendered genome rulers, tick marks, and animated labels that fade in via `transition().duration()`. The example loads data from `genes.json.txt`, which contains gene positions, directions, and DNA sequences for each phage, and it directs users to phamerator.org, a resource for phage genomics.

AI-generated description

Genome browser for phamerator.org

forked from <a href='http://bl.ocks.org/scresawn/'>scresawn</a>'s block: <a href='http://bl.ocks.org/scresawn/b8a8fcb885b6840bfde5'>genome browser</a>

forked from <a href='http://bl.ocks.org/dunlapea/'>dunlapea</a>'s block: <a href='http://bl.ocks.org/dunlapea/7b750aac02c274ce7be1a2ec65681b6b'>genome browser</a>

forked from <a href='http://bl.ocks.org/anonymous/'>anonymous</a>'s block: <a href='http://bl.ocks.org/anonymous/adf2f396ed6f7a06bcee6e03a6f2a375'>genome browser</a>

forked from <a href='http://bl.ocks.org/dunlapea/'>dunlapea</a>'s block: <a href='http://bl.ocks.org/dunlapea/e594934db447063ce886b35c2e3ea0c3'>genome browser</a>

forked from <a href='http://bl.ocks.org/dunlapea/'>dunlapea</a>'s block: <a href='http://bl.ocks.org/dunlapea/63b313292ecb948800fb1bebaef690b3'>genome browser</a>

forked from <a href='http://bl.ocks.org/anonymous/'>anonymous</a>'s block: <a href='http://bl.ocks.org/anonymous/73d2088a4754f9a3b46db81c3a12ca42'>genome browser</a>

forked from <a href='http://bl.ocks.org/dunlapea/'>dunlapea</a>'s block: <a href='http://bl.ocks.org/dunlapea/752ff3769123dd6f733dd1a0fd139698'>genome browser</a>

forked from <a href='http://bl.ocks.org/anonymous/'>anonymous</a>'s block: <a href='http://bl.ocks.org/anonymous/8e82406ccf2abef3600b5c63db1830ca'>genome browser</a>

forked from <a href='http://bl.ocks.org/dunlapea/'>dunlapea</a>'s block: <a href='http://bl.ocks.org/dunlapea/0bc494cbfc5dab3fbea588a6a7cc0cdb'>genome browser</a>

forked from <a href='http://bl.ocks.org/anonymous/'>anonymous</a>'s block: <a href='http://bl.ocks.org/anonymous/e08d1b622815450a47a52deb8644533d'>genome browser</a>

forked from <a href='http://bl.ocks.org/dunlapea/'>dunlapea</a>'s block: <a href='http://bl.ocks.org/dunlapea/e844a36eff424d262f3de5d9baa16b91'>genome browser</a>

forked from <a href='http://bl.ocks.org/ThanisataS/'>ThanisataS</a>'s block: <a href='http://bl.ocks.org/ThanisataS/1e629563fec7314eae2a09fa71d732a7'>genome browser</a>

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