genome browser

genome browser

This genome browser displays multiple phage genomes aligned horizontally, with genes shown as colored rectangles above or below the genomic ruler depending on their direction and index. It uses D3.js (v3) to render the visualization as SVG and includes animated transitions that fade in ruler tick marks and gene annotations. The data is loaded from a JSON file, with gene positions scaled by dividing nucleotide coordinates by 10, and the interface supports tooltip interactions.

95% match

genome browser

This interactive genome browser displays three phage genomes as annotated horizontal tracks, with genes rendered as colored blocks that alternate position by strand direction and index. A ruler marks genomic positions at 100, 500, and 1000 base-pair intervals, with labels in kilobases. The visualization reads gene data from a JSON file and uses D3.js v3 selections, transitions, and SVG elements to build the layout. Tooltips appear on hover, while tick marks and gene rectangles fade in through timed `transition` calls, creating an animated reveal of the genomic structure.

95% match

genome browser

This example presents a comparative genome browser for multiple phage genomes, displaying genes as colored rectangles along horizontal genome-length rulers. Genes are positioned by their start and stop coordinates, with forward and reverse directions placed on opposite sides of the ruler, and each genome is stacked vertically for comparison. The visualization uses D3.js to load JSON data and render SVG elements, including animated tick marks at 100, 500, and 1000 base-pair intervals, along with tooltip interactions. All visual elements transition smoothly into view using D3 transitions, with gene labels and ruler annotations provided via SVG text.

genome browser

This interactive genome browser displays three phage genomes as horizontal tracks, with genes rendered as colored blocks and directional tick marks indicating forward or reverse orientation. The visualization compares gene arrangements across species, using a ruler with labeled 1-kbp markings to show scale. Built with D3 version 3, it loads gene data from a JSON file and uses SVG transitions to animate the appearance of tick marks and gene rectangles. The code computes tick positions by iterating through genome positions to generate ruler increments.

genome browser

This interactive genome browser visualizes multiple phage genomes as annotated linear maps, with genes displayed as positioned blocks along horizontal rulers. A button toggles coloring by G/C content, and animated transitions highlight nucleotide composition. The implementation combines jQuery and jqPlot for waveform renderings of sequence data with D3 v3 for SVG-based genomic layout and tooltips, using JSON data for three phage species.

genome browser

This genome browser displays multiple phage genomes as horizontal tracks, with genes rendered as blocks along a ruler marked in kilobase pairs. The visualization is built with D3.js v3 for SVG layout and animation, while nucleotide sequences from the JSON data are processed through a custom genome function and plotted using the jqPlot library to generate smoothed GC-content curves beneath each gene track.

MMorganShannonMaryBioInformatics

genome browser

A genome browser displays multiple phage genomes side-by-side, showing genes as colored rectangles above and below a central ruler. Genes are colored by orientation, with tick marks and labels marking genomic positions at 100, 500, and 1000 base-pair intervals. The visualization uses D3.js to load JSON data, append SVG elements, and animate opacity transitions for the ruler, ticks, and gene blocks, with tooltips on hover.

93% match

genome browser

This interactive genome browser visualizes three phage genomes (D29, U2, L5) by rendering gene blocks as annotated SVG tracks with transition animations and scale bars. It uses D3 v3 to load JSON data from `genes.json.txt`, while jqPlot generates a separate, smooth-scrolling GC-content line chart from DNA sequences via the custom `genome` prototype function. D3 handles tick marks, labels, and tooltip-style overlays, with genome positions divided by 10 to map nucleotide coordinates to pixel widths.