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Gist ffe9f8d0b2895d371a31fea0a2c5894c

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Aakeshavan
Last edited May 30, 2018
Created on May 30, 2018

This notebook fetches PubMed abstracts for a list of autism MRI research paper IDs, then writes each abstract to a separate JSON file along with metadata. It uses pandas to read the CSV of PMIDs, requests and untangle to query the NCBI E-utilities API and parse the XML responses, and simplejson to serialize the output. The code also creates a manifest file mapping each PMID to its index and query string.

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