Gist fb39aee08b636aec6b8a68d4011241cf

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Gist fb39aee08b636aec6b8a68d4011241cf

✓ Published0🌍 Public

Last edited Feb 8, 2019

Created on Feb 8, 2019

This visualization counts the number of contigs in a genome assembly file. It parses the FASTA-formatted file `gapCloserMinia.break.broken_assembly.fasta` using a Perl script, incrementing a counter each time a line starts with the `>` header character. The final count is printed as a plain integer to the terminal. The script relies solely on Perl's built-in file-handling and regular-expression capabilities, with no external visualization libraries, and does not generate any graphical output.

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