fresh block

fresh block

This visualization presents a simple genome browser, displaying four genes as colored rectangles positioned along a horizontal chromosome. Each gene’s sequence and a descriptive function label appear near its corresponding block, with forward-direction genes in green on the top row and reverse-direction genes in red below. Using d3.v4, the SVG elements animate in sequence with staggered transitions, applying `transition.delay` and `transition.duration` to sequentially reveal each rectangle and text. The data is hardcoded in the script, and the layout derives from each gene’s start position and sequence length.

HHeywhoyou22

75% match

fresh block

Animated genome browser visualization displays four gene sequences as colored rectangles sliding from off-screen into their mapped positions. Forward genes appear green on the top track, reverse genes red on the bottom track, with each sequence labeled and annotated with a color-coded function description. The code uses D3 v4 selections with `transition()` and `delay()` to animate both rectangles and text elements, computing element widths from sequence length and positioning based on each gene’s start coordinate. Data is stored as a hardcoded JavaScript array of gene objects.

HHeywhoyou22

75% match

genome browser

This example, forked from a genome browser block, visualizes a linear genome sequence as an interactive SVG graphic. It loads gene data from a JSON file and renders each gene as a colored rectangle along a horizontal track, with forward and reverse directions distinguished by green and red fills. The visualization includes a 7,800-base-pair coordinate axis with tick marks at 100, 500, and 1,000 base-pair intervals, and it uses d3-tip to display tooltips on hover showing the product name and a clickable BLAST link. The animation fades in the genome track, and hover/click interactions reveal gene details.

genome browser(testing3)

This example presents a genome browser visualization that maps four genes across an 8,000-base-pair genome, displaying each gene’s position, direction, and pham identifier. It shows gene orientation and relative size through animated rectangles that slide into place from outside the genome track, with labels and tick marks for scale. The visualization uses D3.js (v3) selections, data binding with `d3.json`, and `transition` to animate the rectangles. Tick marks for thousands, five-hundreds, and hundreds are generated programmatically, and the genome length and gene data come from an external JSON file.

DDarius9

genome browser

This interactive genome browser visualizes gene arrangements across multiple phage genomes, comparing the positions of homologous genes. The visualization uses D3.js with SVG and animation to display genomic data loaded from a JSON file, with genes rendered as directional blocks along a horizontal track, colored by pham family. Each gene is clickable, linking to its sequence on PhagesDB, and hovering reveals a tooltip with details like gene name, pham, and coordinates. Toggles in the sidebar let users filter which genomes to display, enabling quick comparison of gene order and orientation between closely related phages like Butterscotch and PBl1.

genome browser

This genome browser visualizes gene annotations along a linear genome, using an animated D3.js layout to reveal gene positions, directions, and associated pham identifiers. The example loads gene data from a JSON file and renders each gene as a colored rectangle—green for forward direction and red for reverse—on a track with tick marks every 1000 bases. The initial view places genes off-screen, then transitions them into position over 1.5 seconds, with gene and pham labels fading in afterward. The code uses D3's `selection.transition` for animations and SVG for rendering, with tick marks generated from computed genome positions.

genome browser

This genome browser visualizes gene positions and orientations along a linear genome sequence, using green and red rectangles to indicate forward and reverse directions. The D3.js visualization renders a horizontal track with base-pair tick marks and interactive tooltips that appear on hover. Users can click a gene to trigger a BLAST link, while a hidden tooltip displays additional sequence details. The genes are loaded from a JSON file, and their layout staggers by parity to reduce overlap.

73% match