Gene coding

100%

✓ Published0🌍 Public

Last edited Feb 8, 2018

Created on Jan 30, 2018

This visualization maps six gene annotations along a linear DNA ruler. Blocks, colored green or red according to their coding direction, animate into place at their start positions, with numbered labels fading in after all blocks. The D3 v4 script builds the SVG with block append/transition methods, while the ruler itself is composed of nested black rectangles at 100, 500, and 1000-unit scales generated from a simple loop. Data is embedded directly in the code.

AI-generated description

Built with blockbuilder.org

mit Licensed

Similar vizzes

Loading thumbnail…

fresh block

This visualization presents a simple genome browser, displaying four genes as colored rectangles positioned along a horizontal chromosome. Each gene’s sequence and a descriptive function label appear near its corresponding block, with forward-direction genes in green on the top row and reverse-direction genes in red below. Using d3.v4, the SVG elements animate in sequence with staggered transitions, applying `transition.delay` and `transition.duration` to sequentially reveal each rectangle and text. The data is hardcoded in the script, and the layout derives from each gene’s start position and sequence length.

HHeywhoyou22

83% match

Loading thumbnail…

fresh block

Animated genome browser visualization displays four gene sequences as colored rectangles sliding from off-screen into their mapped positions. Forward genes appear green on the top track, reverse genes red on the bottom track, with each sequence labeled and annotated with a color-coded function description. The code uses D3 v4 selections with `transition()` and `delay()` to animate both rectangles and text elements, computing element widths from sequence length and positioning based on each gene’s start coordinate. Data is stored as a hardcoded JavaScript array of gene objects.

HHeywhoyou22

81% match

Loading thumbnail…

Gene Browser

This example demonstrates how D3.js v4 binds an array of JavaScript objects to SVG rectangles, producing a simple three-color gene visualization. It shows a static sequence of blue, green, and red bars arranged vertically, each fixed at a width of 200 pixels and a height of 50 pixels. The code uses `d3.selectAll("rect").data(gene).enter().append("rect")` to join the data array—which contains `fill`, `x`, and `y` properties—to new rectangles, setting their positions and colors via attribute functions. The data originates from a hardcoded array named `gene`, and the visualization is rendered directly into an SVG canvas using D3’s selection and data-join API, with no interactive or animated behavior.

CCraftbd

81% match

Loading thumbnail…

Random Gene

Four gene rectangles animate horizontally onto a genomic ruler, with forward genes in green and reverse genes in red, each labeled with a letter. The SVG uses d3 transitions with staggered delays to move each gene from off-screen to its start position. Tick marks at 100, 500, and 1000-unit intervals are drawn as black rects, while the gene positions come from a hardcoded JavaScript array. The visualization relies on d3.v4 selection methods and the transition API.

LLaurynKW

81% match

Loading thumbnail…

Genome Browser

This genome browser uses D3 v4 to display four genes, each with a name, DNA sequence, direction, and function. Green forward-oriented genes animate from the left, while red reverse-oriented genes animate from the right, with sequences and function labels moving alongside. A static ruler with tick marks at 1000-base intervals sits beneath them. The visualization uses animated SVG rectangles and text elements with `transition().duration(1500)` and staggered delays to illustrate gene positions along the genome.

HHeywhoyou22

80% match

Loading thumbnail…

genome browser

This example presents a simple genome browser visualization built with D3.js, displaying four annotated genes along a linear genome sequence. It shows the relative positions and orientations of genes as colored rectangles, with green indicating forward direction and blue indicating reverse direction, placed above and below a central axis respectively. The visualization includes a ruler with tick marks at 100, 500, and 1000 base-pair intervals, computed programmatically from the genome length. Using SVG rendering with animations, the code loads gene data from a JSON file, then uses D3 transitions to animate gene rectangles growing into place and tick marks drawing themselves sequentially, while gene name labels fade in after a delay.

AAdamBlaine1

80% match

Loading thumbnail…

genome browser

This visualization presents a linear genome browser for a synthetic DNA sequence, displaying four annotated genes along a horizontal genomic axis. It shows the relative positions, lengths, and orientations (forward in green, reverse in red) of each gene, with staggered vertical offsets for readability. The visualization animates the appearance of gene blocks and labels using D3 transitions, and it renders tick marks at 1000, 500, and 100 base-pair intervals to indicate scale. The code uses D3’s selection and transition methods (e.g., `.transition().delay().duration()`) to sequentially reveal the genome, starting with the ruler, then the gene rectangles, and finally the text labels. Gene data comes from a JSON file, and the scale is fixed at one pixel per ten base pairs, with the SVG width set to one-tenth of the genome length.

BBrandonStroud

79% match

Loading thumbnail…

Gene structure display

This visualization displays a linear genome map as a series of tiers, with colored segments representing genes along a specified range. Segments are automatically arranged into rows to avoid collisions, and hovering reveals a tooltip with details. The code uses D3 v3 with SVG rendering, custom collision detection, and underscore.js for data grouping, with data sourced from KEGG and a custom `d3.svg.geneStructure` function.

11Cr18Ni9

79% match